Hi John,
I'm facing similar issue for desktop application as well.
When there are two executables running, one can spy elements on other exe but couldn't highlight.
This is the case where single application opens multiple windows.
As a workaround, I had to create separate object for every exe launched within the same application and attach to existing screen.
Let me know if you have better options.
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Sahana Mohan
Solution Designer
Blueprism
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Sahana Mohan
Lead Software Engineer
SS&C Blue Prism